- Atomic state writes (tempfile + os.replace) so a crash mid-write cannot
corrupt linked.json.
- Managed-symlink guards in FileSystem.create_symlink and the new
remove_symlink: refuse to overwrite or delete a path unless it is
absent or already a symlink pointing to the expected source. Stops
silent user-file deletion in the plan/apply race window.
- plan_link adopts orphan symlinks whose readlink already matches the
desired source, so a partial-apply failure can be recovered by rerun.
- _load_state warns loudly on each stale entry it drops, and status()
no longer rewrites linked.json as a side effect of read.
- _apply_plan dispatches exhaustively; unknown LinkOp types raise.
- Remove _checkout_module_ref early-return for branch == "main" -- it
assumed the remote default was main, breaking master-default repos.
Always run the explicit checkout (idempotent).
- Warn when a module's cache_dir is absent during link, suggesting
flow dotfiles repos pull.
- LinkOp.type and ModuleRef.ref_type tightened to Literal[...]; dead
"create_dir" enum value removed from the model.
Tests: +29 covering atomic writes, overwrite guards, remove_symlink
semantics, orphan adoption (match/mismatch), partial-failure rerun,
status read-only, branch/tag/commit checkout argv, uncloned-module
warning, stale-state warnings.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
1. _merge_config: track explicit fields instead of comparing to defaults
2. plan_install: let asset resolution errors propagate (fail loudly)
3. _install_binary/_install_appimage: use argv lists instead of shell strings
4. _find_module: narrow exception to OSError/YAMLError, raise ConfigError
5. _install_binary: use pkg.extract_dir to scope binary search
6. plan_install: raise FlowError when pkg type needs PM but none found
7. Frozen dataclasses: change mutable list fields to tuples throughout
8. Remove dead stream_shell method and unused Console import
9. Guard os.getuid() with hasattr for cross-platform safety
10. _parse_targets: raise ConfigError on malformed entries
11. Bootstrap modules: use shlex.quote on all interpolated values
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Delete old core modules (action, stow, process, system, variables),
old services (package_defs, ssh), and all tests for deleted code.
191 tests pass with the new codebase.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Complete rewrite of all core modules with proper abstractions:
- FlowError hierarchy with PlanConflict and ExecutionError
- Pure template substitution ($VAR, ${VAR}, {{expr}})
- XDG path constants
- Frozen PlatformInfo dataclass with context detection
- Console with color/quiet/TTY support
- Runtime primitives (CommandRunner, FileSystem, GitClient, SystemRuntime)
- Config loading with target parsing and manifest merging
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Plan fixes:
- detect_platform raises FlowError not RuntimeError
- TargetConfig lives in core/config.py only (remote domain imports it)
- plan_link handles source changes (remove_link + create_link)
- resolve_package_targets skips local files when mount_path is root
- LinkedState.from_dict guards on version mismatch
- Added missing test for parse_module_ref with absent ref
- Task 12 now has full tests and serialization format
- Task 13 uses spec signatures as truth, old code as reference
- Task 15 includes describe() examples and tests
- Task 24 has detailed test cases for ProjectService
- Note that conflicts.py is intentionally merged into planning.py
- Spec Section 12 example fixed to include filesystem_check arg
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
- Add CLAUDE.md with development standards
- Remove docs/architecture.md and docs/flows.md (obsoleted by redesign spec)
- Track docs/code-review.md
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
- Add TargetConfig model to remote domain with normalization rules
- Add SetupModuleDef model to bootstrap domain
- Fix domain purity: Package carries pre-walked file lists, parse_module_ref
takes parsed dict not file path, discover_packages moved to service layer
- Clarify conflict detection: cross-package collisions (pure) vs filesystem
conflicts (injected callback in plan_link)
- Add dry_run to init, repos_pull, repos_push, stop, remove, respawn
- Document interactive commands (edit, attach, exec) as dry_run exceptions
- Document ProjectService as read-only (no dry_run needed)
- Fix ContainerState -> ContainerInfo naming consistency
- Add post-install and allow-sudo fields to config YAML example
- Document core/paths.py constants including MODULES_DIR
- Add target config normalization rules
- Clarify validate_env as eager precondition check, not a plan action
- Clarify setup show as effectively setup run --dry-run
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
